Ribbon Freesurfer

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Inheritance graph

Defined in file : brainvisa/toolboxes/freesurfer/types/freesurfer_types.py

Used in the following processes

02 Launch Freesurfer full pipeline recon-all
Convert Freesurfer images to nifti format
Freesurfer NATIVE meshes To BrainVisa conversion pipeline
Freesurfer outputs To BrainVisa conversion pipeline
Import FreeSurfer grey/white segmentation to Morphologist

Associated formats

Aperio svs
DICOM image
Directory
ECAT i image
ECAT v image
FDF image
FreesurferMGH
FreesurferMGZ
GIS image
gz compressed MINC image
gz compressed NIFTI-1 image
Hamamatsu ndpi
Hamamatsu vms
Hamamatsu vmu
JPEG image
Leica scn
MINC image
NIFTI-1 image
Sakura svslide
SPM image
TIFF image
TIFF(.tif) image
Ventana bif
Zeiss czi

Associated ontology rules

  • freesurfer :
    • {subject}/mri/ribbon
    {subject}/mri/ribbon_native
    {subject}/mri/lh.ribbon
    {subject}/mri/lh.ribbon_native
    {subject}/mri/rh.ribbon
    {subject}/mri/rh.ribbon_native
  • freesurfer-bids :
    • subj-{subject}/ses-{acquisition}/mri/ribbon
    subj-{subject}/ses-{acquisition}/mri/ribbon_native
    subj-{subject}/ses-{acquisition}/mri/lh.ribbon
    subj-{subject}/ses-{acquisition}/mri/lh.ribbon_native
    subj-{subject}/ses-{acquisition}/mri/rh.ribbon
    subj-{subject}/ses-{acquisition}/mri/rh.ribbon_native

    Key attributes

  • freesurfer :
    • subject ,  space ,  side
  • freesurfer-bids :
    • subject ,  acquisition ,  space ,  side